Dynamic time warping (DTW) is a fundamental technique in time series analysis for comparing one curve to another using a flexible time-warping function. However, it was designed to compare a single pair of curves. In many applications, such as in metabolomics and image series analysis, alignment is simultaneously needed for multiple pairs. Because the underlying warping functions are often related, independent application of DTW to each pair is a sub-optimal solution. Yet, it is largely unknown how to efficiently conduct a joint alignment with all warping functions simultaneously considered, since any given warping function is constrained by the others and dynamic programming cannot be applied.

Dynamic time warping (DTW) is a fundamental technique in time series analysis for comparing one curve to another using a flexible time-warping function. However, it was designed to compare a single pair of curves. In many applications, such as in metabolomics and image series analysis, alignment is simultaneously needed for multiple pairs. Because the underlying warping functions are often related, independent application of DTW to each pair is a sub-optimal solution. Yet, it is largely unknown how to efficiently conduct a joint alignment with all warping functions simultaneously considered, since any given warping function is constrained by the others and dynamic programming cannot be applied.

Time series data in real-world applications such as healthcare, climate modeling, and finance are often irregular, multimodal, and messy, with varying sampling rates, asynchronous modalities, and pervasive missingness. However, existing benchmarks typically assume clean, regularly sampled, unimodal data, creating a significant gap between research and real-world deployment. We introduce Time-IMM, a dataset specifically designed to capture cause-driven irregularity in multimodal multivariate time series. Time-IMM represents nine distinct types of time series irregularity, categorized into trigger-based, constraint-based, and artifact-based mechanisms. Complementing the dataset, we introduce IMM-TSF, a benchmark library for forecasting on irregular multimodal time series, enabling asynchronous integration and realistic evaluation. IMM-TSF includes specialized fusion modules, including a timestamp-to-text fusion module and a multimodality fusion module, which support both recency-aware averaging and attention-based integration strategies. Empirical results demonstrate that explicitly modeling multimodality on irregular time series data leads to substantial gains in forecasting performance. Time-IMM and IMM-TSF provide a foundation for advancing time series analysis under real-world conditions. The dataset is publicly available at https://github.com/blacksnail789521/Time-IMM, and the benchmark library can be accessed at https://github.com/blacksnail789521/IMM-TSF. Project page: https://blacksnail789521.github.io/time-imm-project-page/

Branched broomrape (Phelipanche ramosa (L.) Pomel) is a chlorophyll-deficient parasitic plant that threatens tomato production by extracting nutrients from the host, with reported yield losses up to 80 percent. Its mostly subterranean life cycle and prolific seed production (more than 200,000 seeds per plant, viable for up to 20 years) make early detection essential. We present an end-to-end pipeline that uses Sentinel-2 imagery and time-series analysis to identify broomrape-infested tomato fields in California. Regions of interest were defined from farmer-reported infestations, and images with less than 10 percent cloud cover were retained. We processed 12 spectral bands and sun-sensor geometry, computed 20 vegetation indices (e.g., NDVI, NDMI), and derived five plant traits (Leaf Area Index, Leaf Chlorophyll Content, Canopy Chlorophyll Content, Fraction of Absorbed Photosynthetically Active Radiation, and Fractional Vegetation Cover) using a neural network calibrated with ground-truth and synthetic data. Trends in Canopy Chlorophyll Content delineated transplanting-to-harvest periods, and phenology was aligned using growing degree days. Vegetation pixels were segmented and used to train a Long Short-Term Memory (LSTM) network on 18,874 pixels across 48 growing-degree-day time points. The model achieved 88 percent training accuracy and 87 percent test accuracy, with precision 0.86, recall 0.92, and F1 0.89. Permutation feature importance ranked NDMI, Canopy Chlorophyll Content, FAPAR, and a chlorophyll red-edge index as most informative, consistent with the physiological effects of infestation. Results show the promise of satellite-driven time-series modeling for scalable detection of parasitic stress in tomato farms.

Modern time series analysis demands frameworks that are flexible, efficient, and extensible. However, many existing Python libraries exhibit limitations in modularity and in their native support for irregular, multi-source, or sparse data. We introduce pyFAST, a research-oriented PyTorch framework that explicitly decouples data processing from model computation, fostering a cleaner separation of concerns and facilitating rapid experimentation. Its data engine is engineered for complex scenarios, supporting multi-source loading, protein sequence handling, efficient sequence- and patch-level padding, dynamic normalization, and mask-based modeling for both imputation and forecasting. pyFAST integrates LLM-inspired architectures for the alignment-free fusion of sparse data sources and offers native sparse metrics, specialized loss functions, and flexible exogenous data fusion. Training utilities include batch-based streaming aggregation for evaluation and device synergy to maximize computational efficiency. A comprehensive suite of classical and deep learning models (Linears, CNNs, RNNs, Transformers, and GNNs) is provided within a modular architecture that encourages extension. Released under the MIT license at GitHub, pyFAST provides a compact yet powerful platform for advancing time series research and applications.

The long horizon forecasting (LHF) problem has come up in the time series literature for over the last 35 years or so. This review covers aspects of LHF in this period and how deep learning has incorporated variants of trend, seasonality, fourier and wavelet transforms, misspecification bias reduction and bandpass filters while contributing using convolutions, residual connections, sparsity reduction, strided convolutions, attention masks, SSMs, normalization methods, low-rank approximations and gating mechanisms. We highlight time series decomposition techniques, input data preprocessing and dataset windowing schemes that improve performance. Multi-layer perceptron models, recurrent neural network hybrids, self-attention models that improve and/or address the performances of the LHF problem are described, with an emphasis on the feature space construction. Ablation studies are conducted over the ETTm2 dataset in the multivariate and univariate high useful load (HUFL) forecasting contexts, evaluated over the last 4 months of the dataset. The heatmaps of MSE averages per time step over test set series in the horizon show that there is a steady increase in the error proportionate to its length except with xLSTM and Triformer models and motivate LHF as an error propagation problem. The trained models are available here: https://bit.ly/LHFModelZoo

Time series analysis is pivotal in domains like financial forecasting and biomedical monitoring, yet traditional methods are constrained by limited nonlinear feature representation and long-term dependency capture. The emergence of Large Language Models (LLMs) offers transformative potential by leveraging their cross-modal knowledge integration and inherent attention mechanisms for time series analysis. However, the development of general-purpose LLMs for time series from scratch is still hindered by data diversity, annotation scarcity, and computational requirements. This paper presents a systematic review of pre-trained LLM-driven time series analysis, focusing on enabling techniques, potential applications, and open challenges. First, it establishes an evolutionary roadmap of AI-driven time series analysis, from the early machine learning era, through the emerging LLM-driven paradigm, to the development of native temporal foundation models. Second, it organizes and systematizes the technical landscape of LLM-driven time series analysis from a workflow perspective, covering LLMs' input, optimization, and lightweight stages. Finally, it critically examines novel real-world applications and highlights key open challenges that can guide future research and innovation. The work not only provides valuable insights into current advances but also outlines promising directions for future development. It serves as a foundational reference for both academic and industrial researchers, paving the way for the development of more efficient, generalizable, and interpretable systems of LLM-driven time series analysis.

--Epilepsy is a common neurological disorder that affects around 65 million people worldwide. Detecting seizures quickly and accurately is vital, given the prevalence and severity of the associated complications. Recently, deep learning-based automated seizure detection methods have emerged as solutions; however, most existing methods require extensive post-processing and do not effectively handle the crucial long-range patterns in EEG data. In this work, we propose SeizureTransformer, a simple model comprised of (i) a deep encoder comprising 1D convolutions (ii) a residual CNN stack and a transformer encoder to embed previous output into high-level representation with contextual information, and (iii) streamlined decoder which converts these features into a sequence of probabilities, directly indicating the presence or absence of seizures at every time step. Extensive experiments on public and private EEG seizure detection datasets demonstrate that our model significantly outperforms existing approaches (ranked in the first place in the 2025 "seizure detection challenge" organized in the International Conference on Artificial Intelligence in Epilepsy and Other Neurological Disorders), underscoring its potential for real-time, precise seizure detection. Epilepsy is a prevalent neurological disorder distinguished by recurring seizures. Worldwide, there are approximately 65 million people with epilepsy, more than Parkinson's disease, Alzheimer's disease, and Multiple Sclerosis combined.

Multi-modal time series analysis has recently emerged as a prominent research area in data mining, driven by the increasing availability of diverse data modalities, such as text, images, and structured tabular data from real-world sources. However, effective analysis of multi-modal time series is hindered by data heterogeneity, modality gap, misalignment, and inherent noise. Recent advancements in multi-modal time series methods have exploited the multi-modal context via cross-modal interactions based on deep learning methods, significantly enhancing various downstream tasks. In this tutorial and survey, we present a systematic and up-to-date overview of multi-modal time series datasets and methods. We first state the existing challenges of multi-modal time series analysis and our motivations, with a brief introduction of preliminaries. Then, we summarize the general pipeline and categorize existing methods through a unified cross-modal interaction framework encompassing fusion, alignment, and transference at different levels (\textit{i.e.}, input, intermediate, output), where key concepts and ideas are highlighted. We also discuss the real-world applications of multi-modal analysis for both standard and spatial time series, tailored to general and specific domains. Finally, we discuss future research directions to help practitioners explore and exploit multi-modal time series. The up-to-date resources are provided in the GitHub repository: https://github.com/UConn-DSIS/Multi-modal-Time-Series-Analysis

Time series data are foundational in finance, healthcare, and energy domains. However, most existing methods and datasets remain focused on a narrow spectrum of tasks, such as forecasting or anomaly detection. To bridge this gap, we introduce Time Series Multi-Task Question Answering (Time-MQA), a unified framework that enables natural language queries across multiple time series tasks - numerical analytical tasks and open-ended question answering with reasoning. Central to Time-MQA is the TSQA dataset, a large-scale dataset containing $\sim$200k question-answer pairs derived from diverse time series spanning environment, traffic, etc. This comprehensive resource covers various time series lengths and promotes robust model development. We further demonstrate how continually pre-training large language models (Mistral 7B, Llama-3 8B, and Qwen-2.5 7B) on the TSQA dataset enhanced time series reasoning capabilities, moving beyond mere numeric tasks and enabling more advanced and intuitive interactions with temporal data. The complete TSQA dataset, models, executable codes, user study questionnaires for evaluation, and results have all been open-sourced.